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call_for_papers [2014/10/28 19:25]
call_for_papers [2014/12/05 00:08] (current)
lhu [Call for papers]
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 **Challenge data set** \\ **Challenge data set** \\
-We propose a contest in three challenge data sets:  +For CAMDA 2015, we have have compiled the following exciting contests: 
-   * a Systems Biology challenge of meaningfully integrating multi-track -omics data featuring dual dose response profiles of drugs, + 
-   * the prediction of clinical therapy response in childrenwith over 500 matched RNA-Seq and microarray expression profiles of glioblastoma patients, and +   * The FDA SEQC consortium has compiled series of synthetic benchmarks and applied use-cases to assess the performance of modern gene transcript expression profiling methodsfor the first time systematically assessing RNA-Seq in a wider context. SEQC is providing two benchmark challenges to CAMDA 2015: 
-   * the decoding of drug compatibility from an extremely large toxicology data set.+     * A toxicogenomics study with matched NGS and microarray profiles for the response of over 100 rat livers to 27 chemicals with 9 different modes of action. 
 +     * A synthetic reference benchmark with built-in truths, spanning multiple NGS, microarray, and qPCR platforms. 
 +  A selection of large-scale cancer studies of less well-studied diseases from the lastest data release of the International Cancer Genome Consortium (ICGC), including matched gene and microRNA  expression profiles from RNA-Seq, somatic CNV, methylation, and protein expression profiles. Only processed data are provided due to access restrictions by ICGC.
  Please see the [[contest_dataset|contest data set page]] for more information.  Please see the [[contest_dataset|contest data set page]] for more information.

Atul Butte, MD, PhD
Atul Butte, MD, PhD
Stanford University School of Medicine

Nikolaus Rajewsky, PhD
Nikolaus Rajewsky, PhD
Max-Delbrück-Center for Molecular Medicine

Terry Speed, PhD
Terry Speed, PhD
The Walter and Eliza Hall Institute of Medical Research

Sandrine Dupoit, PhD
Sandrine Dudoit, PhD
University of California, Berkeley

John Quackenbush, PhD
John Quackenbush, PhD
Harvard School of Public Health

Eran Segal, PhD
Eran Segal, PhD
Weizmann Institute of Science

John Storey, PhD
John Storey, PhD
Princeton University

Chris Sander, PhD
Chris Sander, PhD
Memorial Sloan Kettering Cancer Center

Temple F. Smith, PhD
Temple F. Smith, PhD
Boston University

Extended Abstract Proposals Due20 May 2015
Abstract Deadline for Poster Submission 25 May 2015
Notification of Accepted Contributions30 May 2015
Early Registration Closes7 Jun 2015
CAMDA2015 Conference10–11 Jul 2015
ISMB 2015 Conference11–14 Jul 2015
Full Paper Submission Click to save the dates!25 Sep 2015

Agilent Technologies


Taylor&Francis Online

Systems Biomedicine

Exosome Diagnostics